CDS

Accession Number TCMCG051C10596
gbkey CDS
Protein Id XP_024452263.1
Location complement(join(11389757..11389903,11390222..11390293,11390390..11390452,11390547..11390911,11391118..11391235,11391392..11391466,11391658..11391792,11392558..11392635,11392718..11392816,11392898..11393011,11393316..11393471,11394779..11394907,11394985..11395056,11395126..11395268,11395709..11395775,11395878..11395949,11397217..11397288,11397370..11397492,11398205..11398313,11398667..11398785,11398877..11398927,11399080..11399175,11399412..11399504,11399627..11399677,11399798..11399968,11400263..11400514,11401432..11401962))
Gene LOC18096919
GeneID 18096919
Organism Populus trichocarpa

Protein

Length 1190aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA17973
db_source XM_024596495.1
Definition regulator of nonsense transcripts 1 homolog isoform X2 [Populus trichocarpa]

EGGNOG-MAPPER Annotation

COG_category L
Description Regulator of nonsense transcripts 1 homolog
KEGG_TC -
KEGG_Module M00430        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03019        [VIEW IN KEGG]
KEGG_ko ko:K14326        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03013        [VIEW IN KEGG]
ko03015        [VIEW IN KEGG]
map03013        [VIEW IN KEGG]
map03015        [VIEW IN KEGG]
GOs GO:0000184        [VIEW IN EMBL-EBI]
GO:0000932        [VIEW IN EMBL-EBI]
GO:0000956        [VIEW IN EMBL-EBI]
GO:0001101        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003729        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005829        [VIEW IN EMBL-EBI]
GO:0005886        [VIEW IN EMBL-EBI]
GO:0005911        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006401        [VIEW IN EMBL-EBI]
GO:0006402        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006952        [VIEW IN EMBL-EBI]
GO:0007154        [VIEW IN EMBL-EBI]
GO:0007165        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009056        [VIEW IN EMBL-EBI]
GO:0009057        [VIEW IN EMBL-EBI]
GO:0009314        [VIEW IN EMBL-EBI]
GO:0009416        [VIEW IN EMBL-EBI]
GO:0009506        [VIEW IN EMBL-EBI]
GO:0009605        [VIEW IN EMBL-EBI]
GO:0009607        [VIEW IN EMBL-EBI]
GO:0009611        [VIEW IN EMBL-EBI]
GO:0009617        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009648        [VIEW IN EMBL-EBI]
GO:0009719        [VIEW IN EMBL-EBI]
GO:0009725        [VIEW IN EMBL-EBI]
GO:0009743        [VIEW IN EMBL-EBI]
GO:0009751        [VIEW IN EMBL-EBI]
GO:0009753        [VIEW IN EMBL-EBI]
GO:0009755        [VIEW IN EMBL-EBI]
GO:0009756        [VIEW IN EMBL-EBI]
GO:0009863        [VIEW IN EMBL-EBI]
GO:0009867        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010033        [VIEW IN EMBL-EBI]
GO:0010182        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0014070        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019439        [VIEW IN EMBL-EBI]
GO:0023052        [VIEW IN EMBL-EBI]
GO:0030054        [VIEW IN EMBL-EBI]
GO:0032870        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034655        [VIEW IN EMBL-EBI]
GO:0035690        [VIEW IN EMBL-EBI]
GO:0035770        [VIEW IN EMBL-EBI]
GO:0036464        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0042493        [VIEW IN EMBL-EBI]
GO:0042742        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043207        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044248        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044265        [VIEW IN EMBL-EBI]
GO:0044270        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0046677        [VIEW IN EMBL-EBI]
GO:0046700        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048571        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051704        [VIEW IN EMBL-EBI]
GO:0051707        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0055044        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070887        [VIEW IN EMBL-EBI]
GO:0071229        [VIEW IN EMBL-EBI]
GO:0071236        [VIEW IN EMBL-EBI]
GO:0071310        [VIEW IN EMBL-EBI]
GO:0071322        [VIEW IN EMBL-EBI]
GO:0071395        [VIEW IN EMBL-EBI]
GO:0071407        [VIEW IN EMBL-EBI]
GO:0071446        [VIEW IN EMBL-EBI]
GO:0071495        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071944        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0098542        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901361        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901575        [VIEW IN EMBL-EBI]
GO:1901700        [VIEW IN EMBL-EBI]
GO:1901701        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGATAACCAAGACAATAACCTCTACGAAACGGCCTCGCAGCCAGACACAGCAACAGACGCCTACACCTTCCTTGAATTCAACACACAAGGCGAATCCGATTTTGACTACCCCGAATTCCGCTCTCCGGTGGCCTGGCCCACTCCTTCTGACTCTCTCGGCGCCACCTCTTCCGCCGTAGACCCTACCTCTTCCGACCACCGTACCGCCGCTTCCACCCCCGATCTCCACTCTGATTCTCTTGCTGCGTCTCCTGTCGCGTCAAAATCTGCTGCGCGTGGCGGTGGAGCGAACAGTGGGACCCAGGGGGTGGTGGAGGGGTTAGTAGCGAGCATAGGAGGGTTGAATTTTGAAGAGACGGGAGATGATGACGGGTATGAGTTTGGGAAAGGGGATTTTACGGAGCACGCTTGCAGGTACTGTGGGGTTTCGAATCCTGCGTGTGTTGTGAGGTGTAATGTGCCGTCATGTAGGAAGTGGTTCTGTAATTCAAGAGGGAATACATCTGGTTCGCATATTGTTAATCATCTGGTTCGAGCAAAGCATAAAGAAGTCTGTCTCCATAAAGACAGCCCTCTTGGAGAAACAATACTTGAGTGCTACAACTGTGGTTGCCGAAATGTGTTTCTTCTTGGATTTATATCGGCCAAGACAGAGAGTGTTGTTGTCCTCCTCTGCAGGGAGCCTTGCTTGAATGTTAATGCGCTGAAGGACATGAATTGGGACCTGAGCCAGTGGTGCCCCCTTATTGATGATAGGTGTTTTCTACAGTGGCTTGTGAAGATCCCATCCGAACAGGAGCAGTTGAGGGCTCGCCAAATTAGTGCTCAACAAATAAATAAAGTAGAAGAACTTTGGAAAACTAATCCTGATGCCACCCTTGAAGATCTTGAGAAGCCTGGTGTTGATGATGAGCCACAGCCTGTGGCATTGAAGTATGAAGATGCATATCAGTACCAAAATGTATTTGCTCCACTTATTAAGCTTGAAGCTGACTATGATAAAATGATGAAAGAGTCTCAAAGCAAGGATAATGTCACTATTCGATGGGATATTGGCCTTAACAAGAAGCGTGTTGCATATTTTGTATTTCCAAAGGAGGACAATGAGTTGCGTCTTGTACCTGGTGATGAGTTACGACTGCGCTATTCTGGAGATGCAGCTCATCCAGCATGGCAATCAGTTGGGCATGTGATCAAGCTAACTGCACAAGAGGAGGTTGCACTTGAGCTTCGTGCTAGTCAGGGAGTTCCTGTTGACGTGAACCATGGTTTTAGTGTTGATTTTGTTTGGAAGAGCACGAGCTTTGATCGGATGCAGGGAGCAATGAAGACTTTTGCAGTGGATGAAACCAGTGTCAGTGGGTATATATATCACCACTTGTTGGGCCATGAGGTTGAGAATCAAACAGTTCGTAATGCATTGCCTCGCCGTTTTGGGGCACCTGGTCTTCCAGAGCTGAATGCATCCCAAGTTCTTGCTGTGAAGAATGTCCTCCAAAAGCCCATTAGTTTGATTCAAGGTCCACCTGGCACAGGAAAAACTGTCACTTCTGCAGCCATTGTATATCACATGGCCAAACAGGGCCAAGGGCAGGTTTTGGTGTGTGCCCCAAGTAATGTGGCTGTAGATCAGCTAGCTGAGAAGATAAGTGCCACTGGCTTAAAGGTGGTTAGGCTATGTGCAAAATCAAGGGAAGCTGTTAGTTCTCCTGTTGAGCATCTCACCCTTCACTATCAGGTCAGACATCTGGACACTTCAGAGAAAAGTGAACTTCACAAGTTGCAACAATTGAAAGATGAACAAGGGGAACTGTCCAGCAGTGATGAGAAAAAATACAAAGCACTGAAACGAGCGACTGAAAGGGAAATTTCTCAAAGCGCTGATGTCATCTGTTGCACTTGTGGTGGTGCTGGAGATCCTCGGTTGTCAAATTTTAGGTTTCGCCAGGTACTAATTGATGAGTCAACTCAAGCGACAGAACCAGAGTGTCTTATTCCTTTGGTACTTGGGGCGAAGCAGGTTGTTTTTGTTGGTGACCATTGCCAGCTTGGTCCTGTCATTATGTGCAAGAAAGCTGCTCGTGCTGGGTTAGCCCAGTCTCTCTTTGAACGCCTTGTTTTACTTGGTGTGAAACCAATTAGATTGCAGGTTCAATATCGCATGCACCCGTGTCTTTCTGAATTTCCATCTAACAACTTTTATGAAGGCACTCTACAAAATGGAGTGACTGTCAATGAGAGACAATCGTCAGGCATTGATTTTCCTTGGCCTGTGCCTAATCGTCCTATGTTCTTCTATGTCCAGATGGGACAAGAAGAGATAAGTGCCAGTGGAACATCCTATCTAAATCGTACGGAGGCTGCAAATGTTGAAAAAATTGTAACTACATTTTTGAGGAGCGGTGTAGTCCCGAGCCAGATTGGAGTGATAACACCTTATGAGGGGCAGAGAGCATATATTGTGAACTATATGTCAAGAAATGGTGCCCTCAGACAGCAACTATACAAGGAAATTGAGGTTGCAAGTGTTGATTCATTTCAAGGAAGAGAAAAAGATTACATTATTTTGTCTTGTGTTAGGAGCAATGAACATCAGGGCATTGGATTTCTTAATGATCCTCGGAGGCTGAATGTTGCTCTAACTCGTGCTCGATATGGTATTGTCATCCTGGGAAACCCTAAAGTTCTAAGCAAGCAGCCTTTGTGGAATAGCTTATTAACTCACTACAAGGAACACGAGTGTTTGGTTGAAGGACCTTTGAATAACTTAAAGCAGAGTATGGTTCAATTTCAAAAGCCCAAAAAGATTTATAACGATAGGAGACTGTTTTTTGGTGGTGGACCTGGAATTGTCCCAAATGATAGTTTTGGGTCTGTTGCCTCAGCTAGCTCAAATGCTGATAGAAGAAACTCCCGTTCCAGGGGTTCTTATTTGTCACCAGGCCCACCGAATGGTACCCATAAGCCTGGTGTTGCTGGGTTTCCAATGCCTCGGGTCCCCATTCCACCATTTCATGATGGTCCACCTTCTCAACCATATGCTATTCCTACTCGTGGAGCTGTGCATGGGCCCATCGGAGCTGTTCCTCAAGTCCCTCCACCTGGAAGTCGAGGTTTTAGTGCTGGGCGTGGCAATGCTGGTGCACCTATTGGAAGTCATCTCTCTCACCAGCAAGGCAACCAGCAAGGCATTGGGAATATTGGATCTTTCAACTTTCCTGCCCTAGAGAATCCAAATAGCCAGCCATCTGTGGGTGGTCCACTATCTCAGCCTGGATATGTTAATAATATTCCAGTTCAAGGGTCGAGCCAAACCTTTCGTGATGGATTTTCCATGGGGGGTATGTCCCAGGAGTTCTTGGGCGATGACTTCAAAAGCCAGGGATCACATGTTCCTTACAATGTTGCTGATTTCTCAACTCAGATTTATTGCAATGCCAAATTCTTTGCAGGCATCTCAAGGTGGATATGCTGTCGATTATGTTACACAAGGGGCACAAGGTGGGTTTCCAGGCAACTTCTTGAATCAGAATTCTCAACCTGGATATTCTCGTTTTGGTTCTGGAAATGA
Protein:  
MDNQDNNLYETASQPDTATDAYTFLEFNTQGESDFDYPEFRSPVAWPTPSDSLGATSSAVDPTSSDHRTAASTPDLHSDSLAASPVASKSAARGGGANSGTQGVVEGLVASIGGLNFEETGDDDGYEFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDATLEDLEKPGVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVENQTVRNALPRRFGAPGLPELNASQVLAVKNVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCGGAGDPRLSNFRFRQVLIDESTQATEPECLIPLVLGAKQVVFVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPCLSEFPSNNFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGIVPNDSFGSVASASSNADRRNSRSRGSYLSPGPPNGTHKPGVAGFPMPRVPIPPFHDGPPSQPYAIPTRGAVHGPIGAVPQVPPPGSRGFSAGRGNAGAPIGSHLSHQQGNQQGIGNIGSFNFPALENPNSQPSVGGPLSQPGYVNNIPVQGSSQTFRDGFSMGGMSQEFLGDDFKSQGSHVPYNVADFSTQIYCNAKFFAGISRWICCRLCYTRGTRWVSRQLLESEFSTWIFSFWFWK